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hpc-tech-tips


  • HPC Tech Tips

    How to Benchmark GROMACS GPU Acceleration on HPC Clusters

    We know that many of our readers are interested in seeing how molecular dynamics applications perform with GPUs, so we are continuing to highlight various packages. This time we will be looking at GROMACS, a well-established and free-to-use…

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  • HPC Tech Tips

    Benchmark MATLAB GPU Acceleration on NVIDIA Tesla K40 GPUs

    MATLAB is a well-known and widely-used application – and for good reason. It functions as a powerful, yet easy-to-use, platform for technical computing. With support for a variety of parallel execution methods, MATLAB also performs well. Support…

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  • HPC Tech Tips

    Running GPU Benchmarks of HOOMD-blue on a Tesla K40 GPU-Accelerated Cluster

    This short tutorial explains the usage of the GPU-accelerated HOOMD-blue particle simulation toolkit on our GPU-accelerated HPC cluster. Microway allows you to quickly test your codes on the latest high-performance systems – you are free to upload…

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  • HPC Tech Tips

    Benchmarking NAMD on a GPU-Accelerated HPC Cluster with NVIDIA Tesla K40

    This is a tutorial on the usage of GPU-accelerated NAMD for molecular dynamics simulations. We make it simple to test your codes on the latest high-performance systems – you are free to use your own applications on…

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  • HPC Tech Tips

    AVX2 Optimization and Haswell-EP (Xeon E5-2600v3) CPU Features

    We’re very excited to be delivering systems with the new Xeon E5-2600v3 and E5-1600v3 CPUs. If you are the type who loves microarchitecture details and compiler optimization, there’s a lot to gain. If you haven’t explored the…

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  • Hardware

    Intel Xeon E5-2600 v3 “Haswell” Processor Review

    Update: As of March 31, 2016 we recommend version four of these Intel Xeon CPUs. Please see our new post Intel Xeon E5-2600 v4 “Broadwell” Processor Review Intel has launched brand new Xeon E5-2600 v3 CPUs with…

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  • HPC Tech Tips

    CUB in Action – some simple examples using the CUB template library

    In my previous post, I presented a brief introduction to the CUB library of CUDA primitives written by Duane Merrill of NVIDIA. CUB provides a set of highly-configurable software components, which include warp- and block-level kernel components…

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  • HPC Tech Tips

    PCI-Express Root Complex Confusion?

    I’ve had several customers comment to me that it’s difficult to find someone that can speak with them intelligently about PCI-E root complex questions. And yet, it’s of vital importance when considering multi-CPU systems that have various…

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  • HPC Tech Tips

    Introducing CUDA UnBound (CUB)

    CUB – a configurable C++ template library of high-performance CUDA primitives Each new generation of NVIDIA GPUs brings with it a dramatic increase in compute power and the pace of development over the past several years has…

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  • HPC Tech Tips

    Intel Xeon E5-4600 v2 “Ivy Bridge” Processor Review

    Many within the HPC community have been eagerly awaiting the new Intel Xeon E5-4600 v2 CPUs. To those already familiar with the “Ivy Bridge” architecture in the Xeon E5-2600 v2 processors, many of the updated features of…

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